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Thursday, April 14, 2022

[FIXED] How do I pass all the environment variables from my shell to the bash script it calls?

 April 14, 2022     bash, django, environment-variables, migration, python-3.x     No comments   

Issue

I'm running Python 3.7, Django 2, on Mac OS X. When I run the following commands from the command line, they work seamlessly ...

localhost:web davea$ source ./venv/bin/activate
(venv) localhost:web davea$ python manage.py migrate maps
System check identified some issues:

WARNINGS:
?: (mysql.W002) MySQL Strict Mode is not set for database connection 'default'
    HINT: MySQL's Strict Mode fixes many data integrity problems in MySQL, such as data truncation upon insertion, by escalating warnings into errors. It is strongly recommended you activate it. See: https://docs.djangoproject.com/en/2.0/ref/databases/#mysql-sql-mode
Operations to perform:
  Apply all migrations: maps
Running migrations:
  No migrations to apply.

However, when I create a bash script containing the commands

!#/bin/bash
source ./venv/bin/activate
python manage.py migrate maps

The script dies

localhost:web davea$ sh test.sh 
test.sh: line 1: !#/bin/bash: No such file or directory
Traceback (most recent call last):
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/backends/mysql/base.py", line 15, in <module>
    import MySQLdb as Database
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/MySQLdb/__init__.py", line 18, in <module>
    from . import _mysql
ImportError: dlopen(/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/MySQLdb/_mysql.cpython-37m-darwin.so, 2): Library not loaded: libmysqlclient.18.dylib
  Referenced from: /Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/MySQLdb/_mysql.cpython-37m-darwin.so
  Reason: image not found

The above exception was the direct cause of the following exception:
Traceback (most recent call last):
  File "manage.py", line 21, in <module>
    main()
  File "manage.py", line 17, in main
    execute_from_command_line(sys.argv)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/core/management/__init__.py", line 371, in execute_from_command_line
    utility.execute()
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/core/management/__init__.py", line 347, in execute
    django.setup()
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/__init__.py", line 24, in setup
    apps.populate(settings.INSTALLED_APPS)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/apps/registry.py", line 112, in populate
    app_config.import_models()
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/apps/config.py", line 198, in import_models
    self.models_module = import_module(models_module_name)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/contrib/auth/models.py", line 2, in <module>
    from django.contrib.auth.base_user import AbstractBaseUser, BaseUserManager
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/contrib/auth/base_user.py", line 47, in <module>
    class AbstractBaseUser(models.Model):
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/models/base.py", line 114, in __new__
    new_class.add_to_class('_meta', Options(meta, app_label))
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/models/base.py", line 315, in add_to_class
    value.contribute_to_class(cls, name)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/models/options.py", line 205, in contribute_to_class
    self.db_table = truncate_name(self.db_table, connection.ops.max_name_length())
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/__init__.py", line 33, in __getattr__
    return getattr(connections[DEFAULT_DB_ALIAS], item)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/utils.py", line 202, in __getitem__
    backend = load_backend(db['ENGINE'])
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/utils.py", line 110, in load_backend
    return import_module('%s.base' % backend_name)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/Users/davea/Documents/workspace/chicommons/maps/web/venv/lib/python3.7/site-packages/django/db/backends/mysql/base.py", line 20, in <module>
    ) from err
django.core.exceptions.ImproperlyConfigured: Error loading MySQLdb module.
Did you install mysqlclient?

I have figured out with the help of my friends in comments, that the problem is due to some env vars not being accessible from my bash script. Rather than cherry-pick specific vars, I would like to know how to pass my entire set of environment vars to the script before it runs.


Solution

You can change your start line as below

#!/bin/bash -l
source ./venv/bin/activate
python manage.py migrate maps

The -l flag will make sure that your bash profile is loaded



Answered By - Tarun Lalwani
Answer Checked By - Senaida (PHPFixing Volunteer)
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