[FIXED] How to plot a pie plot inside a donut plot

Issue

The data in csv format:

,H,E,C
A,8393.0,2872.0,5649.0
R,4360.0,2188.0,3892.0
N,2029.0,1137.0,4714.0
D,3234.0,1436.0,6761.0
C,754.0,743.0,1185.0
Q,3529.0,1278.0,2844.0
E,6649.0,2053.0,5248.0
G,2338.0,2200.0,10054.0
H,1389.0,1006.0,2112.0
I,4348.0,4210.0,2734.0
L,8642.0,4386.0,5590.0
K,4805.0,2194.0,4895.0
M,1884.0,913.0,1459.0
F,2767.0,2377.0,2601.0
P,1397.0,987.0,6678.0
S,3136.0,2226.0,6094.0
T,2986.0,2884.0,4950.0
W,987.0,787.0,930.0
Y,2218.0,2145.0,2205.0
V,4689.0,5950.0,3699.0

So here's how I can plot a pie chart for visualizing the percentage of H, E and C

ss_dist_df=pd.read_csv("counts", index_col=0)

plt.pie(ss_dist_df.sum(),  autopct='%1.1f%%', startangle=90)

However, how can I plot another external ring with the aminoacid distribution (the 20 aminoacids) at each conformation (H, E or C)?

Solution

You could adapt the example code of matplotlib's pie chart example. For the values in the donut, you can concatenate all column values (reversed to have 'A' at the left) and use three times the dataframe's index (also reversed).

import matplotlib.pyplot as plt
import pandas as pd
from io import StringIO

data_str = ''',H,E,C
A,8393.0,2872.0,5649.0
R,4360.0,2188.0,3892.0
N,2029.0,1137.0,4714.0
D,3234.0,1436.0,6761.0
C,754.0,743.0,1185.0
Q,3529.0,1278.0,2844.0
E,6649.0,2053.0,5248.0
G,2338.0,2200.0,10054.0
H,1389.0,1006.0,2112.0
I,4348.0,4210.0,2734.0
L,8642.0,4386.0,5590.0
K,4805.0,2194.0,4895.0
M,1884.0,913.0,1459.0
F,2767.0,2377.0,2601.0
P,1397.0,987.0,6678.0
S,3136.0,2226.0,6094.0
T,2986.0,2884.0,4950.0
W,987.0,787.0,930.0
Y,2218.0,2145.0,2205.0
V,4689.0,5950.0,3699.0'''
ss_dist_df = pd.read_csv(StringIO(data_str), index_col=0)
plt.figure(figsize=(10, 10))
plt.pie(ss_dist_df.sum(), labels=ss_dist_df.columns, labeldistance=0.5, textprops={'size': 16},
        radius=0.7, startangle=0, colors=['skyblue', 'salmon', 'lightgreen'])
plt.pie(list(ss_dist_df['H'][::-1]) + list(ss_dist_df['E'][::-1]) + list(ss_dist_df['C'][::-1]),
        labels=3 * list(ss_dist_df.index[::-1]),
        colors=plt.cm.tab20.colors,
        labeldistance=0.9, textprops={'size': 8},
        wedgeprops=dict(width=0.28), startangle=0)
plt.show()

Answered By - JohanC

Answer Checked By - Gilberto Lyons (PHPFixing Admin)